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| _Genetic_Code = 0; | |
| ExecuteAFile("simpleBootstrap.bf"); | |
| SetDialogPrompt ("Please specify a nucleotide or amino-acid data file:"); | |
| DataSet ds = ReadDataFile (PROMPT_FOR_FILE); | |
| DataSetFilter filteredData = CreateFilter (ds,1); | |
| fprintf (stdout,"\n______________READ THE FOLLOWING DATA______________\n",ds); | |
| SelectTemplateModel(filteredData); | |
| _DO_TREE_REBALANCE_ = 1; | |
| ExecuteAFile ("queryTree.bf"); | |
| LikelihoodFunction lf = (filteredData,givenTree); | |
| timer = Time(0); | |
| Optimize (res,lf); | |
| timer = Time(0)-timer; | |
| fprintf (stdout, "\n______________RESULTS______________\nTime taken = ", timer, " seconds\nAIC Score = ", | |
| 2(res[1][1]-res[1][0]),"\n",lf); | |
| ExecuteAFile ("categoryEcho.bf"); | |
| GetString (lfInfo, lf, -1); | |
| return {"Log(L)": res[1][0], "DF": res[1][1], "Tree": Format (givenTree,1,1)} |